Publications by Bartlomiej Waclaw

Resonant noise amplification in a predator-prey model with quasi-discrete generations DOI
M. Giannakou and B. Waclaw, Scientific Reports, 14, 1, p. 1-13 (2024)
Rapid Evolution of Colistin Resistance in a Bioreactor Model of Infection of Klebsiella pneumoniae DOI
Juan-Carlos Jiménez-Castellanos, B. Waclaw, Alison M Meynert, Sean McAteer and Thamarai Schneiders, Communications Biology, 7, 1 (2024)
Substrate geometry affects population dynamics in a bacterial biofilm DOI
Witold Postek, Klaudia Staskiewicz, Elin Lilja and Bartlomiej Waclawa, Proceedings of the National Academy of Sciences (PNAS), 121, 17 (2024)
Evolutionary adaptation is facilitated by the presence of lethal genotypes DOI
Viktoria Blavatska and Bartlomiej Waclaw, Physical Review Research, 6, 1, p. 1-8 (2024)
Proliferating active matter DOI
Oskar Hallatschek, Sujit S. Datta, Knut Drescher, Jom Dunkel, Jens Elgeti, Bartek Waclaw and Ned S. Wingreen, Nature Reviews Physics, 5, 7, p. 407-419 (2023)
Current-density relation in the exclusion process with dynamic obstacles DOI
Juraj Szavits-Nossan and Bartlomiej Waclaw, Physical Review E, 102, 4 (2020)
A roadblock-and-kill mechanism of action model for the DNA-targeting antibiotic ciprofloxacin DOI
Nikola Ojkic, Elin Lilja, Susana Oliveira Lebre Direito, Angela Dawson, Rosalind J. Allen and Bartlomiej Waclaw, Antimicrobial Agents and Chemotherapy, 64, 9, p. 1-17 (2020)
Phenotypic delay in the evolution of bacterial antibiotic resistance: mechanistic models and their implications DOI
Martin Carballo Pacheco, Michael Nicholson, Elin Lilja, Rosalind Allen and Bartlomiej Waclaw, PLoS Computational Biology, 16, 5 (2020)
Predictable Properties of Fitness Landscapes Induced by Adaptational Tradeoffs DOI
Suman G Das, Susana O L Direito, Bartlomiej Waclaw, Rosalind J Allen and Joachim Krug, eLIFE, 9, p. 1-24 (2020)
Absence of MeCP2 binding to non-methylated GT-rich sequences in vivo DOI
John C Connelly, Justyna Cholewa-waclaw, Shaun Webb, Verdiana Steccanella, Bartlomiej Waclaw and Adrian Bird, Nucleic Acids Research (2020)
On measuring selection in cancer from subclonal mutation frequencies DOI
Ivana Bozic, Chay Paterson and Bartlomiej Waclaw, PLoS Computational Biology (2019)
Quantitative modelling predicts the impact of DNA methylation on RNA polymerase II traffic DOI
Justyna Cholewa-Waclaw, Ruth Shah, Shaun Webb, Kashyap Chhatbar, Bernard Ramsahoye, Oliver Pusch, Miao Yu, Philip Greulich, Bartlomiej Waclaw and Adrian P. Bird, Proceedings of the National Academy of Sciences (PNAS), 116, 30, p. 14995-15000 (2019)
Spatiotemporal regulation of clonogenicity in colorectal cancer xenografts DOI
Maartje van der Heijden, Daniel Miedema, Bartlomiej Waclaw, Veronique Veenstra, Maria Lecca, Lisanne Nijman, Erik Dijk, Sanne van Neerven, Sophie Lodestijn, Kristiaan Lenos et al., Proceedings of the National Academy of Sciences (PNAS), 116, 13, p. 6140-6145 (2019)
Totally asymmetric exclusion process with site-wise dynamic disorder DOI
Bartlomiej Waclaw, Justyna Cholewa-Waclaw and Philip Greulich, Journal of Physics A: Mathematical and Theoretical (2019)
Bacterial growth: a statistical physicist's guide DOI
Rosalind Allen and Bartlomiej Waclaw, Reports on Progress in Physics, 82, 1 (2018)
Reduced adhesion between cells and substrate confers selective advantage in bacterial colonies DOI
Craig Watson, Paul Hush, Joshua Williams, Angela Dawson, Nikola Ojkic, Simon Titmuss and Bartlomiej Waclaw, European Physical Society Letters (EPL) (2018)
Phenotypic Switching Can Speed up Microbial Evolution DOI
Andrew C. Tadrowski, Martin R. Evans and Bartlomiej Waclaw, Scientific Reports (2018)
Mechanical interactions in bacterial colonies and the surfing probability of beneficial mutations DOI
Fred D. Farrell, Matti Gralka, Oskar Hallatschek and Bartlomiej Waclaw, Journal of the Royal Society. Interface, 14, 131 (2017)
CANCER Genes, environment, and "bad luck" DOI
Martin A. Nowak and Bartlomiej Waclaw, Science, 355, 6331, p. 1266-1267 (2017)
An exactly solvable, spatial model of mutation accumulation in cancer DOI
Chay Paterson, Martin A. Nowak and Bartlomiej Waclaw, Scientific Reports, 6 (2016)
Beyond the Hypercube DOI
Marcin Zagorski, Zdzislaw Burda and Bartlomiej Waclaw, PLoS Computational Biology, 12, 12 (2016)
Antibiotic resistance: a physicist’s view DOI
Rosalind Allen and Bartlomiej Waclaw, Physical Biology, 13, 4, p. 045001 (2016)
Allele Surfing Promotes Microbial Adaptation from Standing Variation DOI
Matti Gralka, Fabian Stiewe, Fred Farrell, Wolfram Moebius, Bartlomiej Waclaw and Oskar Hallatschek, Ecology Letters, 19, 8, p. 889–898 (2016)
Evolution of Drug Resistance in Bacteria DOI
Bartlomiej Waclaw, Biophysics of infection, Springer, 915, p. 49-67 (2016)
Lower glycolysis carries a higher flux than any biochemically possible alternative DOI
Steven J. Court, Bartlomiej Waclaw and Rosalind J. Allen, Nature Communications, 6 (2015)
A simple non-equilibrium, statistical-physics toy model of thin-film growth DOI
Jeremi K Ochab, Wolfhard Janke, Hannes Nagel and Bartlomiej Waclaw, Journal of Statistical Mechanics: Theory and Experiment, 2015, 9, p. P09013 (2015)
A spatial model predicts that dispersal and cell turnover limit intratumour heterogeneity DOI
Bartlomiej Waclaw, Ivana Bozic, Meredith E. Pittman, Ralph H. Hruban, Bert Vogelstein and Martin A. Nowak, Nature, 525, 7568, p. 261-264 (2015)
Condensation in models with factorized and pair-factorized stationary states DOI
M R Evans and B Waclaw, Journal of Statistical Mechanics: Theory and Experiment, 2015, 9 (2015)
The role of mechanical forces in the planar-to-bulk transition in growing Escherichia coli microcolonies DOI
Matthew A. A. Grant, Bartlomiej Waclaw, Rosalind J. Allen and Pietro Cicuta, Journal of the Royal Society. Interface, 11, 97 (2014)
Condensation in stochastic mass transport models: beyond the zero-range process DOI
M. R. Evans and B. Waclaw, Journal of physics a-Mathematical and theoretical, 47, 9 (2014)
An exclusion process on a tree with constant aggregate hopping rate DOI
Peter Mottishaw, Bartlomiej Waclaw and Martin R. Evans, Journal of Physics A: Mathematical and Theoretical, 46, 40 (2013)
Mechanically driven growth of quasi-two dimensional microbial colonies DOI
F. D. C. Farrell, O. Hallatschek, D. Marenduzzo and B. Waclaw, Physical Review Letters, 111 (2013)
Quantum widening of a causal dynamical triangulations universe DOI
L. Bogacz, Z. Burda and B. Waclaw, Physical Review D, 86, 10 (2012)
Mutational Pathway Determines Whether Drug Gradients Accelerate Evolution of Drug-Resistant Cells DOI
Philip Greulich, Bartlomiej Waclaw and Rosalind J. Allen, Physical Review Letters, 109, 8, p. - (2012)
Explosive Condensation in a Mass Transport Model DOI
Bartlomiej Waclaw and Martin R. Evans, Physical Review Letters, 108, 7 (2012)
Stochastic Description of a Bistable Frustrated Unit DOI
Ashok Garai, Bartlomiej Waclaw, Hannes Nagel and Hildegard Meyer-Ortmanns, Journal of Statistical Mechanics: Theory and Experiment (2012)
RANDOM MATRICES AND LOCALIZATION IN THE QUASISPECIES THEORY DOI
B. Waclaw, Acta Physica Polonica B, 42, 5, p. 1141-1158 (2011)
Dynamical Phase Transition in a Model for Evolution with Migration DOI
Bartlomiej Waclaw, Rosalind J. Allen and Martin R. Evans, Physical Review Letters, 105, 26, p. - (2010)
THE VARIOUS FACETS OF RANDOM WALK ENTROPY
Z. Burda, J. Duda, J. M. Luck and B. Waclaw, Acta Physica Polonica B, 41, 5, p. 949-987 (2010)
Spectrum of the product of independent random Gaussian matrices DOI
Z. Burda, R. A. Janik and B. Waclaw, Physical Review E, 81, 4 (2010)
Mass condensation on networks DOI
B. Waclaw, J. Sopik, W. Janke and H. Meyer-Ortmanns, XI LATIN AMERICAN WORKSHOP ON NONLINEAR PHENOMENA, IOP Publishing (2010)
Mass condensation in one dimension with pair-factorized steady states DOI
B. Waclaw, J. Sopik, W. Janke and H. Meyer-Ortmanns, Journal of Statistical Mechanics: Theory and Experiment, p. - (2009)
Tuning the Shape of the Condensate in Spontaneous Symmetry Breaking DOI
B. Waclaw, J. Sopik, W. Janke and H. Meyer-Ortmanns, Physical Review Letters, 103, 8, p. - (2009)
Pair-factorized steady states on arbitrary graphs DOI
B. Waclaw, J. Sopik, W. Janke and H. Meyer-Ortmanns, Journal of physics a-Mathematical and theoretical, 42, 31, p. - (2009)
Localization of the Maximal Entropy Random Walk DOI
Z. Burda, J. Duda, J. M. Luck and B. Waclaw, Physical Review Letters, 102, 16 (2009)
Approaching the thermodynamic limit in equilibrated scale-free networks DOI
B. Waclaw, L. Bogacz and W. Janke, Physical Review E, 78, 6, p. - (2008)
Power laws in zero-range processes on random networks DOI
B. Waclaw, Z. Burda and W. Janke, The European Physical Journal B, 65, 4, p. 565-570 (2008)
Counting metastable states of Ising spin glasses on arbitrary graphs DOI
B. Waclaw and Z. Burda, Physical Review E, 77, 4, p. - (2008)
MONTE CARLO METHODS FOR GENERATION OF RANDOM GRAPHS
B. Waclaw, L. Bogacz, Z. Burda and W. Janke, PATH INTEGRALS: NEW TRENDS AND PERSPECTIVES, PROCEEDINGS, World Scientific, p. 342-345 (2008)
Condensation in zero-range processes on inhomogeneous networks DOI
B. Waclaw, L. Bogacz, Z. Burda and W. Janke, Physical Review E, 76, 4, p. - (2007)
Balls-in-boxes condensation on networks DOI
L. Bogacz, Z. Burda, W. Janke and B. Waclaw, Chaos: An Interdisciplinary Journal of Nonlinear Science, 17, 2, p. - (2007)
Finite-size effects in Barabasi-Albert growing networks DOI
B. Waclaw and I. M. Sokolov, Physical Review E, 75, 5, p. - (2007)
Free zero-range processes on networks DOI
L. Bogacz, Z. Burda, W. Janke and B. Waclaw, Noise and Stochastics in Complex Systems and Finance, SPIE, p. U224-U234 (2007)
Spectral properties of empirical covariance matrices for data with power-law tails DOI
Zdzislaw Burda, Andrzej T. Gorlich and Bartlomiej Waclaw, Physical Review E, 74, 4, p. - (2006)
Homogeneous complex networks DOI
L Bogacz, Z Burda and B Waclaw, Physica a-Statistical mechanics and its applications, 366, 1, p. 587-607 (2006)
Correlated Wishart matrices and critical horizons DOI
Z Burda, A Gorlich, J Jurkiewicz and B Waclaw, The European Physical Journal B, 49, 3, p. 319-323 (2006)
A program generating homogenous random graphs with given weights DOI
L Bogacz, Z Burda, W Janke and B Waclaw, Computer Physics Communications, 173, 3, p. 162-174 (2005)
Eigenvalue density of empirical covariance matrix for correlated samples
Z Burda, J Jurkiewicz and B Waclaw, Acta Physica Polonica B, 36, 9, p. 2641-2652 (2005)
Spectral moments of correlated Wishart matrices DOI
Z Burda, J Jurkiewicz and B Waclaw, Physical Review E, 71, 2, p. - (2005)
Causal and homogeneous networks
P Bialas, Z Burda and B Waclaw, Science of Complex Networks: From Biology to the Internet and WWW, American Institute of Physics, p. 14-28 (2005)

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Publications by Bartlomiej Waclaw